PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00502.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 333aa    MW: 37260.2 Da    PI: 5.8784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00502.1_g00023.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd +lv +++q+G+g+W+++++  g+ R+ k+c++rw +yl
  Rsa1.0_00502.1_g00023.1 14 KGPWTPEEDIILVSYIQQHGPGNWRSVPKNTGLLRCSKSCRLRWTNYL 61
                             79******************************99************97 PP

2Myb_DNA-binding49.78.3e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Rsa1.0_00502.1_g00023.1  67 RGNFTQHEEKTIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                              89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.289965IPR017930Myb domain
SuperFamilySSF466891.58E-3012108IPR009057Homeodomain-like
SMARTSM007175.5E-151363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
CDDcd001676.05E-121661No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129418.52566116IPR017930Myb domain
SMARTSM007171.6E-1466114IPR001005SANT/Myb domain
PfamPF002492.8E-1467112IPR001005SANT/Myb domain
CDDcd001672.01E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRPPCCEKI EVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PKNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TQHEEKTIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLEKKLQLQR  120
QNGITNEDNT NMTEMSSYDN NNNNICSSNK RIANKGQWEK KLQTDINMAK QALFQALSLD  180
QPTSSISPDL GSPKPHHSAT ATYASSTDNI SKLLQNWASS SSSVPNTSTI FSNDRSSSTG  240
EGGVLDHQSL FSTNSESGSV DEKLILMTET SIFKGESKPK VDTEASTDDH DSLSSIEKWL  300
FDDQGLVQCD DDQDLMDASL EGKKTDNNGQ DLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-261111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00235DAPTransfer from AT1G74650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756530.0KM975653.1 Brassica napus MYB transcription factor 31.1 (MYB31.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588574.10.0PREDICTED: myb-related protein 306-like
RefseqXP_013700637.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-104MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0D3D0P10.0A0A0D3D0P1_BRAOL; Uncharacterized protein
STRINGBra015899.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.11e-172myb domain protein 31